Ensuring that payroll taxes are filed promptly is crucial for maintaining compliance with IRS rules. In QuickBooks Desktop Payroll Enhanced, electronic payment and filing of forms like 940 and 941/944 is simple and easy. A proper QuickBooks e-File setup is the quickest way to submit payroll forms to regulatory agencies.

Payroll e-File setup in QuickBooks makes regulatory compliance with state and federal agencies swift and easy. Form W-2 is one of the most crucial forms that details employee earnings and tax withholdings by the employer. Businesses are required to file this form for every employee who gets compensation.

Leveraging QuickBooks Desktop, employers can e-file W-2s based on the payroll service accessed. In some instances, Intuit manages the form filing, while in other cases, the forms can be submitted online individually.

This guide elaborates on the benefits of e-filing for small businesses. It details how to set up E-file in QuickBooks with QuickBooks Desktop Enterprise to complete crucial payroll tasks efficiently.

Advantages of E-filing for Small and Medium-sized Businesses

E-file systems simplify tax and payroll compliance for small and medium-sized firms. QuickBooks Desktop includes such capabilities to guarantee compliance with IRS regulations.

Here is the list of the key benefits of E-filing in QuickBooks:

  • Quicker Processing
    Automation minimizes manual tax filing and payroll processing time.
  • Lower Expenses
    Digital approaches remove postage, paper, and additional labour charges.
  • Increased Data Security
    Secure systems safeguard employee and financial details.
  • Systematic records
    Digital history ensures precise and ready-to-review transaction records.
  • Flexible operations
    Systems manage rising payroll problems with precision and reliability.

Steps to set up e-File in QuickBooks Desktop Enterprise

The W-2 forms are filed automatically by Intuit for QuickBooks Desktop Payroll Assisted users. However, for QuickBooks Desktop Payroll Basic and Standard, forms need to be set up and filed manually with the IRS.

For Payroll Enhanced, completing a QuickBooks e-file setup is mandatory for W-2 form submission online. Here are the steps to E-file the W-2s from QuickBooks Desktop Payroll Enhanced:

Note: W-2 forms should be filed with the state and federal authorities. For both authorities, the steps to e-file the W-2 forms in QuickBooks Desktop Payroll Enhanced are different.

Step 1. Sign up and Configure Federal Tax e-Payments

1. Sign up for the IRS Electronic Federal Tax Payment System (EFTPS)

Signing up for the IRS Electronic Federal Tax Payment System is a one-time requirement. Here are the steps to enrol in the IRS Electronic Federal Tax Payment System (EFTPS):

  • For businesses commenced after 2011 – Enroll in EFTPS in case is not been done already.
  • For businesses commenced before 2011, perform the following steps:
    • Navigate to EFTPS.gov and choose the tab “Enrollment.
    • Complete the on-screen guidelines to finish the enrolment.
    • In 7-10 business days, get the enrolment and PIN number via email. It is important to note that payments can be acknowledged when information aligns with IRS records. For security reasons, PIN is not shared over the phone.
    • Once the 4-digit EFTPS PIN is received, perform the following steps:
      • Navigate to EFTPS.gov.
      • Choose the “Login” tab.
      • Add the EIN, bank account, and the 4-digit PIN. Alternatively, select the last eight digits of the enrolment number.
      • Complete the prompts to generate the password.

2. Schedule E-Pay for electronic Tax Payments

Here are the steps to set up e-pay and schedule the tax payments:

  • Navigate to “Employees”.
  • Choose the option “Payroll Taxes and Liabilities”.
  • Now, choose the option “Edit Payment Due Dates/Methods”.
  • Choose “Schedule Payments” and click “Federal 941/944/943”.
  • In the “Edit Payment Schedule” screen, change the payment method to E-pay.
  • Choose the payment schedule.
  • Choose “E-pay accounts”. Choose the account type and confirm the bank info is accurate.
  • Choose the “Finish” button.

Step 2. Sign up and Configure e-file

Here are the steps to enrol and set up e-file:

1. Configure the Federal Tax Filing Method

To set up the federal file taxes method, follow these steps:

  • Navigate to the “Employees” option and choose “Payroll Tax Forms & W-2s”.
  • Now, choose “Process Payroll Forms”.
  • Choose the option “Manage Filing Methods” from the “Other Activities” list.
  • Choose the option “Filing Methods”.
  • Choose a federal form (Federal 941/944/943 or Federal Form 940) and click the “Edit” button.
  • Choose the option “Filing As Responsible Individual (Owner/Partner/Corporate Officer) for a single FEIN” from the segment “Select how you want to file the Form”.
  • Choose “E-file” and then click the “Finish” button.

In case enrolling in the IRS e-file program is still pending, complete the steps below.

2. Sign up for the IRS e-file program

Here are the steps to sign up for the IRS e-file program:

  • Choose the option “Enrollments” under the “Filing Methods” screen.
  • Now, choose “Edit” from the “IRS” option.
  • Complete the on-screen guidelines, check the EIN, and input the legal name of the company along with the address.
  • Click the “Next” button.
  • Add the job title, name, email address, and phone number of a contact person. This individual will manage matters related to payroll tax forms and enrolment.
  • Click the “Next” button.
  • Ensure the contact person is related to the company and not a third-party provider.
  • Choose the option “Send Information”.

Note: The waiting period to get the 10-digit E-file PIN via email is up to 45 days.

Conclusion

A proper QuickBooks e-File setup helps automate recurring tasks, minimizes issues, and helps avoid manual data entry. This feature allows automatic filing and state tax payments, saving time and reducing errors.

The process of setting up an e-file in QuickBooks is easy and seamless, as mentioned in this guide. Still, if there is any query or doubt, feel free to reach out to our QuickBooks support experts via live chat, phone, or email.

Frequently Asked Questions

While filing W-2 forms via QuickBooks, are pre-printed forms needed?

Pre-printed forms are not needed while filing W-2 forms electronically via the QuickBooks Desktop Payroll. E-filing transmits employee wage details to tax authorities directly. This removes the need for physical form printing, streamlining compliance documentation.

Are only federal forms filed via Intuit?

Intuit files both state and federal forms when the Full-Service Payroll is running. The service provides the needed tax and wage details to related authorities. This guarantees compliance with payroll tax obligations across multiple locations.

Are there any extra charges for filing W-2 and W-3 forms online via QuickBooks?

Electronic filing of W-2 and W-3 forms is added to the QuickBooks Desktop Payroll subscription. No additional charge is relevant for online form submission. This is due to the reasons that e-filing has been added as a standard payroll service feature.

How to file W-2 forms in QuickBooks Desktop Payroll Assisted electronically?

In QuickBooks Desktop Payroll Assisted, Intuit prepares and files the W-2 forms automatically. This filing is done with the IRS and Social Security Administration, removing the need for manual submission necessities for payroll administrators.

Easily manage data tasks or get expert help with: QuickBooks Errors, Integration, Conversion & Migration, & Download Setup
Chat with an Expert

Get in Touch with Certified ProAdvisors